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Gramene: Genetic Diversity Database

E.g., Germplasm L-WA58, Marker/locus pSB0080.

Experiments

Experiments 1 to 6 of 6.

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Experiment Id Name Design Originator Name Comments  
63 Hamblin et al (2004) Comparative Population Genetics of the Panicoid Grasses: Sequence Polymorphism, Linkage Disequilibrium and Selection in a Diverse Sample. Genetics 167:471-483   Martha Hamblin      View 
84 Casa et al (2005) Diversity and selection in sorghum: simultaneous analyses using simple sequence repeats. Theoretical and Applied Genetics 111:23-30 Data collected on ABI377 Alex Casa      View 
85 Hamblin, Casa, et al. (2006) Challenges of Detecting Directional Selection After a Bottleneck: Lessons From Sorghum bicolor. Genetics 173: 953-964.   Alex Casa   genome-wide scans for selection  View 
86 Hamblin et al (2007) Sequence Variation at Candidate Loci in the Starch Metabolism Pathway in Sorghum: Prospects for Linkage Disequilibrium Mapping. Crop Sci 47:S125-S134.   Martha Hamblin   grain quality panel from Rooney  View 
74 Hamblin et al. (2005) Equilibrium Processes Cannot Explain High Levels of Short- and Medium-Range Linkage Disequilibrium in the Domesticated Grass Sorghum bicolor. Genetics 171: 1247-1256.   Martha Hamblin   LD study  View 
73 White et al. (2004) Molecular Evolution of the Phytochrome Gene Family in Sorghum:Changing Rates of Synonymous and Replacement Evolution. Mol Biol Evol 21:716-23   Gemma White   Sequence data PHYA, PHYB, PHYC  View