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Oryza sativa Germplasm "Dom Sufid"

E.g., Germplasm "IRGC9542", RA4969, Basmati 1, Marker/locus RM22.
expand all sections collapse all sections  Oryza sativa Germplasm "Dom Sufid"
Accession Name Dom Sufid
Institute(s) Holding Accession
Accession Number IRGC12880
Germplasm Type N/A
Genus Oryza
Species sativa
Subtaxa aromatic
Taxonomy Cross-Reference GR_tax:013681
toggle section  Experiments (5)
Title Design Polymorphism Type Allele Scoring Protocol PI(s) Comments Data
Genetic structure and diversity in Oryza sativa L. 234 rice accessions from wide geographical regions of the world genotyped at 169 nuclear and 2 chloroplast loci to elucidate diversity within subspecies Oryza sativa indica and japonica N/A McCouch-S-R, Tai-T-H Prediction of population structure was model-based (STRUCTURE) and based on data from 169 genomic SSRs. Reference: Garris et al., 2005. Show Allele Data
Genome-wide patterns of nucleotide polymorphism in domesticated rice SNP Assay N/A Caicedo-A-L Reference: Caicedo et al., 2007. Pervasive positive selection shapes genome-wide patterns of nucleotide polymorphism in domesticated Asian rice (Oryza sativa). Data for the STS paper was generated based up on TIGRv3 pseudomolecules. The data in this system is based upon version 4. Show Allele Data
Selection under domestication: Evidence for a sweep in the rice Waxy genomic region SNP assay. Sequence analysis across 500-kb region centered on Waxy N/A Olsen-K-M Reference: Olsen et al.,2006. Show Allele Data
~160K SNPs x 20 accessions (McNally 2009 PNAS/Oryzasnp Project) SNP discovery and introgression study with 20 rice accesions N/A McNally et. al.; Reference: McNally et. al., PNAS 2009 Jul 28;106(30):12273-8. Show Allele Data
B-Gross/J-Yulin SNP Pi-ta study in AA Oryza; 143 accessions x 632 SNP Genotyping of 143 germplasm accessions with 632 SNPs N/A Yulin Jia, USDA-ARS DBNRRC Reference: Lee-S et. al, Genetics, vol 183, 2009. GR_ID:54910 Show Allele Data
toggle section  Related Stocks (3)
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