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Allele data for germplasm "HO1195" from the experiment "Selection under domestication: Evidence for a sweep in the rice Waxy genomic region".

E.g., Germplasm "IRGC9542", RA4969, Basmati 1, Marker/locus RM22.

Items 1 to 9 of 9.

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Germplasm
Accession Name

Germplasm
Accession
Number

Subsp.
& subtaxa

Country of
Origin

Stock
Number

Locus
name
Genotype
View All Genotypes on
Marker
Kasalath HO1195     RA5339 wx3_02 CAAGACTCCAGGCCATCCCGAGAACTTCGAGACGCCCGGAGTTGAAGTTA
CCACTGGTCTGTCATCTCAACTGAAGCTCATAGCACCTTTAAGTTTCTAT
GCTTGAATACATACAGAACTGAATGTTTCGGTTTCTTGTTTGGTTTCGTT
CTGTAGGACCTCTTGGTCAGGGTATTGCAAATGCAGTTGGGCTGGCCCTT
GCTGAGAAGCACCTGGCTGCTCGTTTCAACAAGCCCGACAGCGAGATTGT
TGATCACTACACGTAA-TTTTTTTTTTATCATGAATACCTTTAGTTTTCA
CTTTAGTTATGGTGGTGCAACCTTGGTAACATGATTCATGGATTTTGTGC
AGCTACTGTATTTTGGGAGATGGGTGCCAGATGGAGGGTATCTCCAATGA
AGCTTGCTCGTTGGCTGGCCATTGGGGTCTTGGCAAGCTGATTGCATTCT
ATGATGACAACC
View all "wx3_02" genotypes
Kasalath HO1195     RA5339 wx3_06 AAGTGATGGAGTAAGCAAATATCCTAGAGACCTACTAATGTACTCCTCAC
TGTTTGGTACACATAAGTGACAGTAATTATGTTTACTGCAGATAACTGTG
GAAGAAAGCAAGGAAGCTGATACAACGACTAAAGAGGCTACTCATAGAAT
CTCTCGAGGAATTCATGACAAGGTAGATACCTTGCCATGTTGAAATATAT
CGTATAAACTATAATCTCATTAATTGAACCAGCACAATAGTATCAAAGAT
TTCCTCTTGTCTAAAGCTAAGTTCATTATAGTTTTGTTTAGGTCCGTCAC
TAATTTTCTTTGTACTTGAAATTTTAGGGACATTCACTAACAAGGAAGCT
GAAATCGGATGGCAATGTGGACACTACACAGATATTGCACAATCTCCATG
AAGGTTTGTTTTTAGCTTTGGGTGCTTCAT
View all "wx3_06" genotypes
Kasalath HO1195     RA5339 wx3_08 ATTACTCCATTACTTGTGTAGTAACAAT------GCTTTTGGATCTAATT
GCATCAGACACTGTACTCTTTGCACTGACTTCCTTTGATGTGGTAAAAAC
AATGACAGCTTGGAGCAAATGCTATTCTTGCTGTTTCACTTGCTGTGTGC
AAAGCAGGAGCCATGGTGAAGAAGATTCCCCTCTACCAGGTCTGTTAAAC
AACTGCATCGGTATATAACTTTGTTCTTCTGAAACTTCAGAACCTATGCT
AAAACATCAAGAAATTGCAGCACATTGCAAATCTTGCTGGAAACAAGACT
CTCGTGCTGCGTGTACCTGCTTTCAATGTGATCAATGGAGGATCCCATGC
TGGAAACAAACTTGCCATGCAGGTAAAATATTGCTTGCATAACAGGAAC
View all "wx3_08" genotypes
Kasalath HO1195     RA5339 wx3_10 CCAGTTGTAGAGGTATGTGACACAGTCGAAACCTTTTTTGCATTTCCTTG
TTTTTGTTATTCATAATTTCAATTGTTCGTAAATGAAATCTTTTGGCAAA
TTGTAAACAAGTATGGTTTGGATGTTGGACTGGGATATACGACTATGCTG
GGTGTAACACAAACCAGCTGGAGCATGGAATATTGGTACAATTGGAGGTT
TCTTAATTTTTGATGAAATAATCAGAGAAATCCTTCTTTTAATGAATCTT
GCTAGAGGTTGTGCAATGTTATTAAAGTTTGACCCAATTCTGTGAGGTAA
AAGAAACCTTGAGTCCTCTTGTAGCTAGTGGTTCTGCAAACTTTCTTCCA
CGCAAGCTATTAGTGGACTCATGTTTGTTCTCTTCTGACCAATGGCTGTA
CC
View all "wx3_10" genotypes
Kasalath HO1195     RA5339 wx5_02 CCACCCCTGTTCAGTGGTGAGTTGCTGAGTTTGATTTGCTGGATGAATGG
TTTGGGTATATGGTAGTGCGTTCACCGTTAAAACTGAATTGTCAAACATG
ATGATCTCTCGCTCTCTGTATCCAAGCAGCACTGCTGCTGCTTTTTTTCA
GCCATGGAGGGGTTGGATTAGTGGAGCATGTGCGTGCACGCTTCTAGACC
GTAATTATAATGGTTCTTAATGCTGTATTAGCTCGCTAATGCATGTAAAC
AACACCCCCTTACT
View all "wx5_02" genotypes
Kasalath HO1195     RA5339 wx5_04 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNN
View all "wx5_04" genotypes
Kasalath HO1195     RA5339 wx5_06 ATGCCCTTGCTGCTCTTGAGTTAGCACGTACAAACGGATTGAACATGAAT
AACGGGAATGGATTCCCCCAAGGATCTCTCAGCGGATCAAAGAACATCCA
CCACCACGACCAGCTTTCTCATGCTCAGTCATCACCGCTGCAACTGGCAG
ATTCTCCATATGATCATGCTAGAGAAATGCACATATCAGAAGCATACCCT
ATCTCAACAGCTCCAGGGAGTGCTGGAAAAGCAAAGAGGCCAAAGAAGAA
TAGTTCCCAAGCCTCTCCATTGAAGAGGCCATCAGGTGTGCTCCGGAAAA
CCAAGAAACCTTCTGGTGACTGGAAGAATGTCGGGATGTCTGGTTGTGGA
GATGATTCTGCTCATGCTTCTGTGATGAAGAACGAGTGGAAGGACCAAAA
CCTTGGTCTGAATCAAGTTGCGTTTGATGAGTCCACGATGCCCGCGCCTG
CCTGTTCATGCACGGGGAAGCTTCGCCAATGCTACAAGTGGGGAAACGGG
GGATGGCAATCATCATGTTGCACCATGAACATTTCCATGTACCCACTCCC
AGTGATGCCGAACAAGCGGCATGCTCGCATGGGGGGACGGAAGATGAGCG
GCGG
View all "wx5_06" genotypes
Kasalath HO1195     RA5339 wx5_08 GTTCGTGTGAGTACGGATATGAGTAGAGAG---TACTATTTCCCCTTGCT
TTGCATCTACCTGAGTTTTTGTGCATTTGACTAGCCTGTATTTTCTTTTT
ATAATCCTGCACACTTCACCTGATTTGACCCCTCATGCCATGATGTGACA
CAGTTCTTTACTATTTTACTTTAAGCCTGTGGATTTGCTCGCTGATTAGT
TTATTTGTGCTCTAATGATTTGCCTCTCTGCAGTGATCTCAAGGGGAACA
AGCTCACTGGCCAAATCCCAGATGAGATTGGGGACTGCATCTCCTTAAAA
TATTTGTACTTCACCTAATCTAAGTCTTCTTTTATTCTGTTACTTTTTGT
AACAGGGTGTTCTAGC
View all "wx5_08" genotypes
Kasalath HO1195     RA5339 wx5_12 AAACTGTACAAGCTTAGCTCTGCACAAGCTAAGCCAAGCCATCGGTTTTT
GACTCGAATTAATATCGAGCCGTTTGATCGATCGCCCAACCGACCAACCA
GCTAGTCCATGTTTCTGACCTGGATCTTGAATTCTGAATGCACATGGGGA
TTGATTGAACTGAAGACGCCATTGATGCAAGCTTGCCGGTTCGGTCACTG
GGAGGTGGTTCAGACGCTGCTGGTTTTCAGATGCAATGTAC---AGTAAA
CTGATTAGCTCCTGCACTTCAGTTAATTGCAACGATTAATCAGTAAATTA
GAAATTAACTTTTG-----------TTTTTACTGAAGGTGTGGAGGGTGG
AGAACCTGAGTGGGCGGACGGCGCTGCACATGGCGGCGGCCGGCGGGCAT
GTCAAGTGCGTCAGGCTGCTGGTGGCGGACGCCGCCGGCGACAGAGACGG
GTAAGCCATTGTTGTTGTTGAGGAGCTCGAGCGAGGTGGCGGCCATGGTG
ATCTCG
View all "wx5_12" genotypes
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