grain_icon Diversity Home | Tools | SNP Query | Launch TASSEL | Download Data Sets | Tutorials | FAQ | Release Notes

Allele data for germplasm "KFS1" from the experiment "Hamblin et al. (2005) Equilibrium Processes Cannot Explain High Levels of Short- and Medium-Range Linkage Disequilibrium in the Domesticated Grass Sorghum bicolor. Genetics 171: 1247-1256.".

E.g., Germplasm L-WA58, Marker/locus pSB0080.

Items 1 to 23 of 23.

[ Download ]

Germplasm
Accession Name

Germplasm
Accession
Number

Subsp.
& subtaxa

Country of
Origin

Stock
Number

Locus
name
Genotype
View All Genotypes on
Marker
KFS1   NULL South Africa   LDregion1A CTTTTTGTGTTTTGAGGGAGTTCTACTATACTTCTGTTGGACTGATCATT
GTAAAGATTTGTTCAAATAGGGTCATCTTAATTGTTTGAAATCTGGGAAC
TGTGGCTTCACTGCACTCGGGAAAAGGCAATTCATGGTTATGGCACGAAT
AACTTATGGAAATAGACCTTAGAGTTGCTGCATGATTGTCACAAATCATT
GCTATGATATCTTATAATAGTTCTTTCTACTTCGCATTACATGTATAACT
GCAACTTTTAGTTGCGTTAAAAAAAAACCCTGTAACTCTTAGACCACTCA
CCACTGTAATCTTTCCTGAATTGTTGTTTAATGGCATGTATAAACTCACC
ACTTATGTACTTATCTAGGAAAAAATAGTCTAACTCTGGGCCCCATGTTT
GCAGCATTTTCAAACACAGTCCTCTAGAAAAAGTTATGCTGATGCAAACC
ATGTATCTGCTATCATTTTGGGTGGAGGCACTGGATCTCAGCTCTTTCCT
CTGACAAGCACAAGAGCTACGCCTGCTGTAAGAGATAACATTGAACATCA
AATGTTGATTACTCTATTATAGTATTATACAGAATATAAATTTCAAATTT
ATCTTAGTTTTGTACAGTATTTAGTGGATTCTTCTCATTTTCAAGATACA
CAATTGAACCATTATTGAAGTATGTAAGACAGCCAGTTGAAAAACTATAT
TCTTTTGGGAGACTTTCAGTCAAAATTTCTTAGAAGGTTTTTTGGTCCAG
ATGTTCTGATACCTTATTTTTT
View all "LDregion1A" genotypes
KFS1   NULL South Africa   LDregion1B CAAGCTTCTAGTAATGATATAATATTCAATCTGTTTAGCACGTGAACACC
TCAATTCTTGTTGTTACTGTACATCCCACCCAATCCCAGAGGCCCAGATT
ACCACGACATGAATACAAGAAGAATGTTGAACCCAGATCTAGAGTTTCTT
CTGTTTGGTGGTACTGTTGCAAATTGGTGGTGATTCATTTTGTTATTGCA
CTTTCTGATAACAACAGGACTGTGTGATGATGGGAGCGGACATCTATGAA
ACTGAAGAAGAAGCTTCAAAGCTACTGTTAGCTGGGGAGGTCCCAGTTGG
AATAGGAGGGAATACAAAGATAAGGTGAGTATTGGATGTGGAACAACATT
GTATATGTATAACCACCGGTAGTTCCCAAATATCACACTCACTGACACCT
GATGGTATCCTCTGATGATTTCCAGGAACTGCATCATTGACATAAACGCT
AGGATTGGGAAGAACGTGGTGATCACAAACAGTAAGGTGAGCGAGTACAC
CTACATGGGTGCAGAAACTTGTGTGCTCATCTATCCATTCCAACGCTGGT
GTTGTGACCATGGGGTTGTTCCACTCTTTGTGACAGGGCATCCAAGAGGC
TGATCACCCTGAGGAAGGGTACTACATAAAGTCTGGAATTGTGGTGATCT
TGAAGAATGCAACCATCAAGGATGGGTCTGTCATATAAACCGGGTGCCTG
TGCGCCTGCAAAACAAGAACCTACAATGGTATCACATCGATGGATCGTGT
AACCTTGGTAGGGAAGAGCCGCTTGCCAGAAAGTCCAGCGTTCGGGCGCA
A
View all "LDregion1B" genotypes
KFS1   NULL South Africa   LDregion1C CGCGTCCTCACTCTC-TGCGGCAACTGGGACACTGGGTCTGGGTGCGCCG
GCGCCCTACTCTATTCGCCTGCTGCCCAGGCGTTCGTCGCGTCCTTCGCC
GGCGACGAGCACCCAGCCACCCACCAGGTACCCTTTCACTCGTCCCTGCT
GTGCGAAACTGGGCACTGGAACCAGTAAGCTATTTGGCAATTTTTGTTCG
GATCTGATCTAATTACAATGTATCCATGCCTGCTAACTTCAA---TTTTT
TTAATTTTCTTTACC--AAAAAAAAAGCGTACAAGGGTACACCCATGTCT
CTGCTCCTCTGCCCCTGGATTCCACGTCTAGCAGGCAGCAGCATTGCTTT
TGGCTATCCATTTCGGGTCATAATTGGTGTCAGTATCGCCCGTATGTTGA
AGGGTGATAGTTAGGCTTGCAAAGGGATCGGTGTGGGG-TGCTCCTAATC
CTGATCCGCGAATCCGTTTACTCAATTTGAGG-TCTGGGGTCAATCCGCC
CGTTTATTTTTT-CTGGCAATGAAGATCCGTGCGCATCTAGGTTTGGCCC
TCTCTTCACTTGTTCGTTAAGGACTGTCTTCACCCTGAAGTTTGCAAACA
GAGCAACAGACCTGAAACTAGCAAGTTGAGATTTCTGCTCAATCGTGTTG
CTTTCAACTTCTCTGTGCATGCAAAGCACAATGCACACTCAATGACTAAA
TATAAAAGAGAAAATAAATAAAATTATAAAA-GTTAGTATTGAACAAAGA
TTAACAAATTACAG
View all "LDregion1C" genotypes
KFS1   NULL South Africa   LDregion1D TCTTCACTTTTAGCTACTTCCATACATGTCCCTAGCTTTGTAGCCTTCTC
CTTCCGTCCCACAATAAGTGCAATTCTAGTTTTCAAACTTTGTCTGAAAA
TAAGTGTTTCTAGCTTGTGCACCACCTAGCACTAGAGGGCTTAGTTGCCC
TCTGTTTCCAAAGAATAATCATTGCATGTTGGGACACTTTTTATAGGGGC
ATATATGTCATGTCCTAATAACACTGATCTACCCAAATAATCGTAGAACT
GCACTTACTGTGGGACAGAGTATAATTTCCTCCCTGAATCGTACAACTGC
ACTGTCCTATCCTGTCAAGTAGAAGTT---AATTTCCTCCATGAATCATC
AGATCTCATACCTTGTATGAGTATTGTTTAGTGCTACATCCTGTACTTTA
TCTCTCCCTCCCTCTCTCCCCCCAAAAAAGAAACAGGGGTGGGGAGATAC
CTTATGTTTCAGTTGTAGTAACTACCTGCGGTCATGTTTCAAAAAGAAAA
AAAGAAAAAAAA-GGAAAAGAAAAAACAAACCTACTTGCGGTCATGTACA
GGCAATGATATGGATGCTGGCCTGTAACCTCATTAGTTTGAGTGCTATTT
GTATGATTGTATCCTTCGTTTCCTGTTTAATTTATTAGTGAACTGTGCAT
CCTCGATCACTGTCCAATCTTACGGATACCTCGCATTTTGTAAACATGCA
TTGGGTTATACTACCTTATCTAACTCT-AAGTGGCGCATGCTGTAATGTA
GGAGATAATCGAGGACGACGCAAAGCTTCGAGCACTCAAAGAAGAACATG
GAGAAGAAATCTATGCACTGGTGACAAAGGCGCTG
View all "LDregion1D" genotypes
KFS1   NULL South Africa   LDregion1E CTTACGCCTTGCCCTTATAGTAGAGATCCTACAAATAAGTTGTCTGTATT
CCTTTTGCAACAACTCAAAACACATCTCTTCGTAAATTCAACAGAATTTC
TTATATGAAAACTATCTATGTATAGGGAACATTATTTTTAATGAACGTTT
TCTCCATCCCAGTCTTCAAGTGTGTTCAGGCTATGGCTTCTTCTTCCTTC
GGGTTTAGAAAGGAGGGCTTGGGGAGATAGGTAGGCACAGTGGTTGATGA
GGACATGACATCTATATAACTATTGATTATAAGGTGAGCTCATTCTTATA
TTTGTATAGTGATTTTT-GGTACAATTTACTTGGTTTTACATATACATAT
CATTATTTGATTGTAGATTCAAATATATCTCAAAGTGCAAGTCCATCAAA
GTGGAACTTTCAGTTCATCGGTAGCTCGATAGTGCTTTATTGGGAAGGCC
ATAACTCATCCATCCAAAGTGAGATCGAAGTCAATGAGCACTTGATGGAA
AGCTTGTTTGATAAGCTTTCAAATAGATCTGATCCCACCTCAATATCACA
CTGACAAGGACTTCAAATCATCATGATATTCTGTCACTGTTTCTGCCAAG
AGCTATATCATCATCATGGGTATATTTTCATCCTTAGGACCCTG--GCCT
AAGTGGGAGCACACCCCAAAGAGAAGAAGAACCCACCAAGGAAGCCCTTG
GACGTCCTCCTCCTTGGCCACCACTTTAGAGGGTCAGCAATTTCGTTCAA
GCCAAGTCAGAGATCTTATCCATATCAAGTTCGAATCCATCTCGGGGCTC
CAGGAGCAGTCAATAGTAAAACAAACGCCCAGGATACATTTTGGACTCTG
TTTTTGATGATCCATATATGGATGGAAATATAATTTCATAATCTAACCAA
TGGTTTTAGTTTCAGGCCCAAACTCCATCGGAGTCAATGAGAATCATCAA
AACAAGTTGACGTCGAGAATCTGTCAGGGCA
View all "LDregion1E" genotypes
KFS1   NULL South Africa   LDregion1F CCCTGGCGGAGAAGGCGGCGCTGGCGTACGCGGCGGAGCACGGCATGGAG
CTCGTCACCATCATCACGACGCTCGTGGTCGGGCCTTTCCTCAGCACGGG
GATGCCGCCGAGCATGATCACCGCGCTGGCGCTCGTCACGGGGAACGAGG
CGCACTACTCGATCCTGAAGCAGGTGCAGTTCGTCCACCTCGACGACCTC
TGCGACGCCCACATCTTCCTCTTCGAGCACCCGGCCGCCGCCGGACGCTA
CGTCTGCTCCTCGTGCGACACCACCATACACGACCTCGCCGCCATGCTCA
GGGATAGGTACCCCGAGTACGACATCCCGGAGAGGTTCCCAGCTGGGA--
----TCGAGGACGACCTCCAAATGGTGCACATGTCGGCCAAGAAGCTCCA
AGACCTTGGGTTCACTTTCAGGTACACGAGGATGGAGGACATGTACGACG
ACGCCATCCGGACGTGCCGGGAGAAGGGCCTCATCCCCCTCGCCGCTGCC
GGAAGGGACGACGGCTCTGCCTCAGTGCGCGCACCCGGCGAGAGGGATGT
GACGGCCACTGCCGGAGGGGACGTC---TCTGCCCCAGTGCGCGCACCCG
GCGGCGAGACGGATGTGACGATTGGCGCTTAGGCAACAATCGCTGGTTTG
ACAAAAAATTACGGCT-CCCCGTGGATGATGATGCTAT----CAGCTATC
TATCGTACGTCCCTTCGAGCGCCGCTGGCAATGCGGGAGGAAATTTACAA
CAACAATGCCTCGACGCACGAAGTAAATTATATTCGGTGTGTTTGAATTC
C
View all "LDregion1F" genotypes
KFS1   NULL South Africa   LDregion2A CCATCCGCCATGGATAGGCCGGCTTCATGGGCCATGGCTGCGTGACCGCT
CTGTGTTGTCGTGTAACGTGTAGTATTGCTGGGCCAGAAACATCACGCCT
CGTTTGTCATACCGCGGCAATAGTTGTAGTGGACTGTAGTCTGTAGTAAT
TCCGTTGCGACTTGATGACAGAATCCGAGCAAAATACGTTTTAAGGCGCC
CTGTCAGAAAGTAAAATCTGCACTTAAGGCGAGTTTT-ACTACTAGTGTG
CTCGTGCGTTGGTCTGTGCCCTTTGTACATACACGTTCCAACGCCGCACG
GAATTCATGTTTACTGCCATTAGTCTTTAAGATTCCAAACTT--GTGGCT
TGTGGTATTGATGCTTGGTTGTTTTTTTGTT------CCAGAATGTTTGG
AAATTGTTTCGGCACACTGAATAGGTGATCACTTTGATTAGTTCTAGATA
TCTGAACAGTATTTTGATACGGTGTATGTTTCACCTTTCAAACATTTTTA
TCAGAAAAAAAAAT-ATAAAAAAAA--GATAGACCGTATCATTTCCTTTG
TCATATTTCTTTAGTTTAATTTTGTGTATCATTTCCTTTGTCATATTTCT
TTAGTTTAATTTTGTTGTAGGATGTTGAGCTTATTTTACACTGAAAAAAT
TATACACTAATGGTTAAGGAGATTGTCATGACACTGTGAATTGTCTGGCA
AATGCCATTTCACCTTTCAAACATTTTTTATTAGGGAAAAAAAAGATAGA
CAAGCGTATCATTTCCTTTGTCATATTTCTTTAGTTTAATTTTGTTGTAG
GATGTTGAGCTTATTTTACACTGCAAAAAATATACAGTAATGGTTAAGGA
GATTGTCATGACACTGCG
View all "LDregion2A" genotypes
KFS1   NULL South Africa   LDregion2B GCGTGTGACATTGTTTTGCACGAAGGCTTTAAGGGCTTGT----TGCTAG
TTTTATCTTGTTAGTGATTACTATCCC-ATTCTAATTGGAAATGAATTGT
CTTCCCTTTTCGTACATAATGTTATGATTTGTTATTCAGGCATCAACTGA
AATTTCTTTAGTTTCGTTTGTGCTGGGCATCTTTTATTATTGAGAAATTA
TTCACATTTTTTTGAATTCTTATTGCTAGAGTAGGCTTATTTATGTTGGG
AGAGATTATGCTGAAATGCGCATGATTCTGGATGATGAAGAAAATCAATC
GGATTCCCATTGATTTTACAATATGATTTTAACAACCAGCTACTTCTGAC
AAAATCATGCCACACCAGGATATACTTTGCCTCTTTGGTCTAGCAATCTA
ATGCTTTTGCTTATGTTTTTGTCATCATGGTTGATTATTTGATACATGCA
TTTGTTATGATGATACACCATTTTCAGATCATAATGTATGGTACTGTATC
ATCTTAACTCCTTGAAATTGATTCATTCATTTGTTTATATTGTGATGTGC
CTATGATGTGATCAAAATATTTGCTACTCTTGATGGGTGTTGTTCCCATT
TGATGATCTTAACCACCAAGATCTCTGAGGCCCATCACATTGCAATTAGA
AAGACTCAGTTCACGTGAGCACTTTAGAGTGGCAGTAGGAGTTGCCTGAT
GT------TT
View all "LDregion2B" genotypes
KFS1   NULL South Africa   LDregion2C AGTGCATAAGAAAAGGTAAGTATAACTATAAAAATTTGCATTTTATCAGC
AAGTGACAATTATATCCAGCTTATGGCCCATCTACAAGACAAACTAGCTA
AATAGCAAATCATCTGATCAAGAATACAAGTCCTGCATTACATCCCTCAT
ACAATGAATGAAGAAAAAAATGCTACCCAAACACAGAGAAAAGACATCCC
ATGG---CTTCATCTTTAAGGAGGGGAGTATCAAACTGTAGCTGTTCAGG
AAACTCACTCAAAATAGTTCAGGGAGGAACAGGGATGGAACCAGAATATC
AAGTCACTAAGTCAAATACACTTTTTGGTTCACTTAGAAGGGTGGTTTGC
AAACCTTAAGGAACTTATAATGGAATTTGAATTTTTCATCAGGTCAGCTG
AACCCAACGAATACACATAGCTCTGTTCCTGTGGAGGGACACACAAGGAA
CACTTGTCCATGGACACTTGTATTTGTAAAGTTTCATGATTTCTAAAACA
CAATCACGTGCAAGAGAATGATCTAACATTTTTATAATTAAGAATTAAAT
ATCACTACATCAGTACATTAATCATAATCGGAATTTGTTACTATTTGGTC
GAGAGAGTTGGACAGAGCAAAAGAGAAGGAAAAATAGTTTATAATACCTC
GGCCTCAATTTGCTGAAGTAAGCCAATCTCTGCTTGCTATTCCTAGTAAG
ACGGTGGTCTGA
View all "LDregion2C" genotypes
KFS1   NULL South Africa   LDregion2E TGTACAGCAGGACCATATCAAATCTAAAAATAGATTAATGATCCACTATA
TTAATAACAATACCAAGATGTGCACATGAAA-----------CTAACTGG
ACCAATGTGAAGTTCAATTTTACATCAACACCCAGCTACCACGGATTTTA
TTTTTCCTTAACCCAGCAGACCTTGCTACCTGTTCATCATTACCAGCTAT
CACATGACCACCAGGAACTTGCTCTTTCCTTTTTGAAACCCACCAAAGCT
TTGCTACTGGCTCAACATTGAGATTCCCTGACCAGTGACCAGCTCCTAGC
CTACCCATCCTACCCATAGGATTCAATCACGATGTGGTCTTCAGCTATTC
CATTATCAAGTTGAAACATCAGAACACTACTCAGGAAGACAGGTACAAAC
AACTCATGTTCATCAAAAGTTCACTTAATTTCCAGTCTTTTACCTACTTA
TTCTACTCAGCAATCGAACACTAGCAAAACATACAAACATTACTTATTAT
CATTCAAACCTGAAAATACAATCAAAAGTTTCATGATCTGGTATAGATTT
CTCACAGCTCATTTTTTACCAACAAGTTCATCTCTCGTTAGCTCCACTTG
CCCCTACTTTTCAAGAAGGAATTCCCCCTGCCTTTCACTTGTCAATAACT
TTTTT-AAACTACACGCACAGCATAGTGC--TTTATTCATGGAAAGCATT
CCCTTAATAAACATCAAATGACCAAATCAAC-AACCTAATCAAAGCACGG
AGAGTTTCATAACC
View all "LDregion2E" genotypes
KFS1   NULL South Africa   LDregion2F GTAGTATTACTAAAGCATGCAGCAGAACCACTTTCATCTAACTCGATCTT
CATACCAAACTCAACCAAATTGTCGCTGCATTTTAACACATTTGATTAGA
TCGCAACACAGAAATAATAAATTGGGCAGTGAACTTAAGAACAAATAAAT
ATTTGATTCGATACACAAAATGTGGACAATTTGCTAGTTTTAGTGTTAAT
AGCAGAGTAAGCTACTAGCCTACTATGACCCATCTGACTGAAAATAGTGA
ATGCCATTACCAAAGAAGTGTTTGGCAGTTACATTTTTGTTACAAACCAA
AAATACATCTAAAGAAATAGTTAAGCCCACA-TTATAAGTGTTGCAGACA
CCATCATGCTGTTACTGTGAAGAACAACT------ATTAGTAAAGTTGCA
GGCTCCTAATTTCAACATAAAAATGAAATGAAGAATCATCAATGATATGA
TGACACTGCAGCACCTCAATTTACCTTTGCTCAAACATTCCACATGTTTG
CGAAAAGGAATCAGTTGATACACCAAATGAATTTAGAAGTGAATCAATTT
CCATTTGCTCTTCACATTCATACAAGATGGGTGACTTTTTTGAGCCATTA
TCCACAATTCCATCTGGAGTATGTATGAATGAACTTGACAGTTGATGTGA
TATATCGTTCTGTCTGTCTCCAGTGCTTGGCATAAAGCCAGAAGATTCTA
TGTGACCAGGATTTGTTCCCC
View all "LDregion2F" genotypes
KFS1   NULL South Africa   LDregion3A CGCCGCACTGTCCGGCCTCCGCCGCCGACGAGCGCGGCCTGATGAGCTCC
GTTGCACTCGTACCACCACCACCGCTGCCGCTGCTGCTGCTGCTGC---T
GGACGCGCCGCTGCGCACGGACGGCGCGGCGGAGGACGCGAACCTGCCCG
CCGCGTCGACCCGTTTCCGGTTTACGTTGCAGGGCTCGGTCGCCCTGCCG
AAGCTGCTGCCGGGCCGCTTCAGGTGCGGCATCGCCTCCTTCTCGCTCAG
CAAGGTGCGCAGCTTCTTCTGCTCCTGCGCCATGGAAATCATCACTTTCA
GGTTAATTATTCAGAATTCTTGTGAGTGCTGTTCTTTTCTTGCATTTTCT
CGCAGGTGTCAAACGATACAGTTGCAGTAATGTCTGTTTACCCTGAGTCG
CCTCCTCTCCTCTTCCTGCCTGATCCTAGCTTGCTTGTGCTCCTCCAAGA
CGGCAACCAAACGAGCCTTGAAAACGGCAAGAAACAGATCAAATTCGTCA
GTTTCTACGACTACGACCACTGAATCATGTCGGCACAGCAGGAACTGGAA
AAGTAGCATACCCCGTCGTACAGGAACGGCTTCTTTCTTTCGCTCTCCCA
TGCGAGTGTTCGAATGATCAGGTTGTCAACAACGGCTGCAGATTTACCAA
CAATGAATTGCTTTAACCGAACTTCAGAGATGCAATCGGAATAACCAAGT
AGGTATCACATTTGGTCTTGTATGAAATGTACCTGGAATCTTGGTGATGA
TAAGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAAACACA--GCAGTTGT-CC
CAGTCTTTATCTGTCTTTCGCATTGGAAATCAGTGTCCAACGTATT-CAG
ATACGCATTTTGGACCTACCATATTGTACTCCTCGAGCCATTTCTCTTCC
TCGCACGCCAGCAGCCACTTGTTTATCTTCTCCATGATTTCTCTCCTGGA
CTGGAGCTCTTCCCTGGCTTTTGCTATCTGCTCGTCAATGCTGGCCATGA
GCTCAGAAGGATTCACGAGACCTG----CAGGCAGATTTTGTCAGCGTTA
GAAATATCAACCTATCTGAACCTTATCATCTCAGTAATAAGTACAG--TA
AGCAGAAACTCTGAACTCGTCGTACCAGAGTCGATCAGCGCAATGGATTT
CTCCGGCACGGTGCTCGCATCAGGCTCCACGTGCATGCTGCGGCAGATGT
TCTCCAGCTCCAGCCGCCTCTTGAGCACGAGCTCCTTCATCCGGCCGGCC
TTGAGCCTCGTCAGCCTCTCCACTTCCTCCTCCGTCTGCACCACGGCCAC
GCCGATGAAACGCCCAACAGGTCAGACACTGACTCTGGAACTACGGCAAT
CGAGTCTGGTA---ACACGAGAGATCACTGCTGTGTAGTGTGTGTACCTT
CTTTATGGTCGCCACTGACAGGACGCCGGA
View all "LDregion3A" genotypes
KFS1   NULL South Africa   LDregion3BC TGGGCCGTTCCTGTGCGACGCCGTGAACTGATACCTCGGTGCGATGAGGG
CGAAAATCGGTGCCATGACCTGCAGTTGGAAGCAGAAACGTTTCTATTG-
AGATGAGTGATGGTGTCTGCAGACTGCACACACTACCGTAAGCACAAAAT
TGCTAGCAA-GCGTGAAGTAATATTTTCTCAGAACAATCAACCCATAAAA
AATGTGGAACAATATGCTATAGATCCGAAAGTTTACTGGCCCCGTGACAC
AATGTTTAGGAAACCACAAGGGACCGTGCTTCTGCTTCATTTTTTTTGAA
AGGGTATAAATATACTGCTAGATTATATTGTTTAAGAAATAACAAGACAA
ATATTACTGAACATTCAACCTGCTTCATTTTTTCAAGGATATAAGTAGTA
GATATTGTTTAAGAAAGAACAAGACATACCGCTATGACTGGGTGGGCAGG
CTGAACACGGACAGCTGGTGATGTCAGGACAATACCGCTAATGAGAGTTT
TTACCTCTGGATCAAGCGCAGCCTGTTGTGAATCAAAACAGTTAGATTTA
TACAGCAGAAAAGAAATGTGCAACAACACTCCTGAAAGAAGTAAGCTCCA
CAATAATGCAATTCATATGGCACCACTGACGTTACCTTCAGAATGATACC
TCCACCAGTCGAATGGCCGAAGCAGAAGCATGGAAGACCAGGGTTCTCGG
CTAATACTTTCTTGAGGTACATTTTCTACATTAATCAGAAGATTTTGAAT
AAGGATTTACACAGATGGGTCTCAGACAGCTGTGAAGATATTCAATTGCT
CTTACCAAATCATTGACAGCATGATCAAGAGATnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnTAAATTTATCACTGATTCTCACAGTGATGCCTGCAGTTCTGA
CAAATTCCAAATATTCGTTAGCTCAATTGTTTGCTGCATTATTACTATTG
CTATCTGGTTCCTTATTATAATCTAGAATCTCATTCTATGCTCCTACAGC
TTGACATAGTTAATATTTTACATGGTTATACGTAGTAAAAAAAACTATAA
GCAACTCCAAACTAGCACGCAGTTTGTCTAATTCAACAAAGAGAAGCTAA
CCTGAATAAGGGAAAATTAGTTCATAGGCCATTTTTTTGTAATTGTTAAA
TGATGATGTGTACCCAACAATCTGTATCCCTCAAACAGAGTTAAGTGTCC
AAGCCGACAATTATGAATAATCAACACTTCAATTACAATATGGAATGGGA
ATCCACTGAACTGGTGCACTTTATCTAAGCTCCCAGATCACAACTAGATA
ATACACGATACAATAAGGCAACCACAAAGTAACCATGAAAGCGGAGAAGC
ATCATAGCTAAGCTCCCAGCTACAAACCAGATAACATTATCCATCTCAAC
TTCTCAAGGTCAGGGCCTACTTTGGCAGGCCACATGGCTTAGAATCCACC
AAATACAGTGGTAGGGAAAGCAGAAGTGCAACCTATAGGTCAGGAGTTCA
AATCCCTGTTCTCACCACAAAAATAAATAAATAAAAGGCCAATCCTTGCT
ATTTTCAGTGAATGGGTCGGTAACATTAGAATCGGATTTAGACGGAGTAA
GGACAACCAAGGAATGAACAGCTAAAATGAAGCCCTATTTTGGAATGGAG
CAATAAAATTAGAATGGGACTAAGACGGAGTCGGACAACCCAAGGAATGA
ACAGCCAAAATGAAGACAACAAAACACCTGGACACTAAAGTGTAAAAAAT
AGACAGCCTTGCATTTCACTTTAGAAATTGGGTCCATTTCGTCCTAGTGA
GAAATTGGCATCTTTATTCATTGCTCTCGTCATAGCTGGTGAATTGTTTG
TGGCACTAGTTAATTAAGTTCACAATCACACAATCATCAACATGGATGAA
AATCAAATCAAAACATACATGCATAAGTAGTTCGTGATACTATA--AGAT
TTGAAGCATGACAACCAAAAAAGGAGAAAAAAG
View all "LDregion3BC" genotypes
KFS1   NULL South Africa   LDregion3D GTGAATCATCACCAAGTGTTGCAAAACCAGATACCAGATCAGAGGTATCT
TCTGCAATACCTTGACTGACAGACAACCAACTACTGCCAATTGTACGTCT
TCCACCTGAATATGTGAGTGCAAGGTTATTATTCAGGAGCCAAACAATAT
GATACAGAAAAATTAAAATAATCAGCATTAAGAAGTAAGAACATGCAGCC
ATCACCTCACACTTCAGGGGAAAAAAGAAGAAAAACGTAGAAGATGAATG
GAAAACAAAACAACTATAGAAAGATGAAACGTCGGTCAATGATCTATCTA
GGGGAAAAGAAAGAAACCATTAAGCAAAATAGTTTCTTTTTGTGTGTGTG
GAGAGGGAAGGGGGGCGAGGGGGGCATTGCTTTAAAAAAATTAATTACAA
CATATGGATTATCACTAATAATTTATACACGGTAGAGCAAGTATCGCATG
CAATATATGTACTTGAAACGTCTGGAAAAACAAAAAACTAATAATTTTCT
CACATTGTAGTGGCAATAGACGAGGCTTAAACAAATAAATGGGTCTGAAA
AAAATTTGCAACAACATGTATCATTTCAAATTGAAGATCGTTAATAGTCA
TGTAAGTGTAAAGGATATGTTGCTACTTAGGATGTGCCTAGCCATGTCAA
TGAAGAGAATAAATAAATGTTGGTAATTCAGTAATTTACTAGTAACACCA
ATAGGCAACATTTCACAAGAAAAGATGAGATTCTTATTCTGTATTATTAT
AACAAATGTACAGCAATAAACTACATATCAACCAATGTCCTTAGCCATTC
ACAAATATGATACACAAAACATGAACATTAGTCGAACGTTCAAATTTCTT
TGGCCTACTGAACTAAAGTCAGCATTATGGCGTGGGAATATTTTGCATTG
ATTGCAGTCTATTAAATAAAAGTGCCATATCACTATTGAACTCGCTAGCA
ACATACCTGAAGATGTTATTTCTTGCCCAATGGGAACATCAAGATAAGAG
CCAATCATAAAGGCATGATCAGCACTAGACTGCTTGGCTCCAGATCCATG
GTGATTGATCTTTTCCTCCCAGTTCATGTTGACTAGCTTATCTTCAGACT
TGAGCCTCACAGGAGGTAACTTCGGAAGCTCCTCACGCTGATTATCTCCA
ACAAGCTGTAAATCGAAGCATCGGTCAGACACCTGATCTGTATCTAGGGA
TTTTTCGAAGTAATATTGCCTGTTCCCCTCATCAAGCTGTCCTTTTGCAC
CTTTTCCAACACCATCTCCATTAGTGCTCCTCTTTACTTCTTTCCTCTCA
TTTTCATGGTGCGTGCTATTGTAACTAGATGATGGGTTTTCCACAGGGAA
TGGAAGCACTGTCTTAACTGTGCAACCATTCAACATCTCCTCTTTTTCTG
GTACTAGATTTTTATCCCTGGAATGACCTTGTTCATTGATTTCAGTCCTC
CCAGCAGCATCGACTTTTCCCTTCCCTCTTCCAAAAGAGACTTTTTGCTC
CAGCACTGGGCCAGGCTGTTCTGTCCCAACACCTCGATCCCTCTTCTCTG
CCAGCATCGCACCACGCCTATGCCTTGGCACCTCCTCTGACACCAGCAGC
TCAGCTAGCTGTTCAGCAGTGCTGTTTGCAATGCTGAAGGTCCAAGGATA
CAGATCCCCGACGTTGTTCTCCTGAGGCTGGCCAATCCCAGAGCTCTTCT
TTCCATCCGAACC
View all "LDregion3D" genotypes
KFS1   NULL South Africa   LDregion3E GACCTTCATGACCATGTTGTTGGGGTGTGCTTTGTAGCCCAGGATATGAC
TGTTCATAAGTTGGTCATGGACAAATTTACTCGGGTTGAGGGGGACTACA
AGGCAATCATTCACAACCCAAACCCGCTCATTCCTCCTATATTTGGTGCT
GACCAATTTGGATGGTGCTCTGAGTGGAATGTAGCCATGACCAAGCTTAC
TGGGTGGCACAGAGATGAAGTGATAGATAAGATGCTCCTTGGTGAGGTTT
TTGACAGTAGCAATGCTTCCTGCCTTTTGAAGAGCAAAGATGATTTTGTA
CGTCTTTGCATTATCATCAACAGTGCATTAGCCGGTGAAGAGGCAGAAAA
GGCTCAATTCGGTTTGTTTGACCGCAATGGGAAATATATTGAATGCCTTC
TGTCAGTGAACAGAAAAGTAAATGCAGATGGTGTTGTCACTGGAGTGTTC
TGTTTCATTCATGTTCCTAGTGATGACCTGCAGCATGCGCTACATGTGCA
GCAAGCCTCTGAGCAGACAGCACAAAGAAGGTTGAAGGCTTTCTCGTACA
TGCGACATGCCATCAACAAACCTCTCTCAGGTATGCTTTATTCTAGGGAA
ACACTCAAGAGCACAGGTCTGAATGAAGAGCAGATGAGGCAGGTCCATGT
CGCAGATAGTTGTCATCGCCAGCTAAACAAGATACTTGCCGACTTAGATC
AAGATAACATTACTGACAAGTAATCTTCTAGTCTTTTAAACTGTTCTATT
AGGTTATTGTGTTTACTTTCATCTACCTCGTTATTTGACAACTTTCTGAA
CTGTAGGTTAATGGTATCACTTAATTTTATTTCACTAACTACTACTGAAG
CTTATAGCCATATTCGTTACTACCAACTTAATATTTATGTACCATTATGT
TCACAGGTCAAGTTGCTTGGATTTGGATATGGCTGAATTTGTGTTGGAAG
ATGTGGTGGTGTCTGCTGTAAGTCAAGTACTGATAGGTTGCCAGGGTAAA
GGTATCAGAGTTGCTTGCAACCTGCCAGAGAGATTCATGAAGCAAAAAGT
TTACGGGGATGGTATCCGACTCCAACAGATCCTCTCCGACTTCTTATTTG
TTTCGGTGAAGTTCTCTCCTGTTGGTGGCTCTGTTGATATCTCTTCCAAA
CTGACTAAGAACAGCATTGGGGAAAACCTTCATCTCATAGACTTCGAACT
TAGGTACACTTGCCATGCTAATTTGCATGCATACACTCATTTCTGAATAG
GAAATCATAAGGTATGAAGGCTTAAATTACTCTTGTGTTTATGGATTTAT
GGTTTTCAGGATCAAGCACCAAGGAGCAGGAGTCCCAGCAGAAATATTGT
CACAAATGTATGAGGAGGACAATAAAGAGCAGTCAGAGGAGGGTTTGAGC
CTTCTTGTTTCTAGAAACCTTCTGAGGCTCATGAATGGTGAC
View all "LDregion3E" genotypes
KFS1   NULL South Africa   LDregion4A c-GCCGGCCGGAGAAG--AGGAGGAGGAGGAGG---CATGGGGATGGGCA
GCGACGCTGCCGCCGTGTTGTTCCCCTTCTCT---ACCACCACCACCACC
ACCACCACGTCGCCGCGGCTCTGCGGCACCGCCGTCAGTAGTCACAGGAG
GTCAGCAAGGATCCCCATTCCATCTCCAACTCCCGTCCGCTCTCCTTTCC
TTTGCA-----TTGCATAATGGCAACACGGAACAGGAACAGCTTctttag
a---------TTAGATTAGATCCCTCCCTTCACCATTTGCTTCCGCGGCT
CCACTTCTCAACTCCGTCCATCTATCGTTTTGCAAGGACAAGCATCCCAT
GGCCACTCTGAAAAAAGGGGgcGAAAAAATTGCTTTTGCTCCTCTAAAGG
TCCCGTCCAttAGATGCCACTTCTTCTTCTCTTCATAATACCATCAGTCG
CCACCACTCCTAGATCTCTACAACACCCTTTCTTAGTTCtTACAGTGCTT
TATTATCATTTCCTAGAGAGTGAAATTTCATTACCTGTTCCGTGGTACAA
GCAGGTACTAGCAGCCATTCCCTGGAACAGTCTGTTTCAGACTTTCAGTC
AGTTGATTCTTCAGCATCCGCTGTTCTTGGGAGGGAGAGTGTGGCAAAGG
CAAAATGGTGTTATTACAAACAATGCACTAG-----------ACATTGCC
AACTCAAGTGCTAACTAATCTTGGCGTCTAATAAAACTTTTGGGGG-GCA
TTGCATTGACCTGC
View all "LDregion4A" genotypes
KFS1   NULL South Africa   LDregion4E TAAAGAAAGTACATTAGTTCAAAAGCAACCAAAGGAGGGTGAACTTCAGA
ACTTGGCATATAATGATCAAGAATTGCTGCATTGGCTAAACAAGTTTTCA
AGAGAGTAAAGGTAGAG---AAT-AGTCAT---CCATGACGTACTAAATG
CTTCACTAGTCAAAATACAGTGTGTTGTACTGGAACTTTTTTCGAATCAC
AAGGAAGGAACCTCAATTAAGGGACCTGGGGACCAATCTGGGTCCTCAAA
AATATCAATAAACACTGCAGGATAGTTTTTTTTTTATCTTAACCTGCAGG
ATAGTTACTTCC-AAACTTAACTCTCTTGTCATTAATTTGAGAAATGGTA
AACACAGGTTATCGCATCATCTGCCAGCTTACTGCAAATTATAATCAGTA
TATGTTGATTTACAACCATTACCTACTGAATCTGAGAAACAATTTGATGT
GCCGTTGTGTGCAGAACCAGAAGTTATACAGACAAAACATACAAATTTAA
TTTCAGAGCTAAGTGCTTTGATTTTTCAGTTGTTCTCAGTCAGTGAACCT
ATGATGATCCAATTAGATCCGCACCTTTTATCACACCCGAAAACACCATT
TGTAACACGCAGGCTAGTTTGCTCCGGTCACAAAATGATCAAATGCACAG
ATCGATTGGAACATGAGCAGTACACATTTATGTGGTTTTTTTTCTCCTTC
TAATCAGAATTGTGCCGTTCTCATCAGAATTAAGTTTAAGAATGTGAATT
GCAACGCACAGGATACTTATTTCCGATCACGAAACGCTCA
View all "LDregion4E" genotypes
KFS1   NULL South Africa   LDregion5A CGCATGGGAGGTCTCCAGGGCAGGGATGATGCCCTCCAGACGAGAGACAC
GCTTGAAAGCTGAATGTGAGAGTAGCCATGTGATTAGATGTTCAACATAG
CATTGATGACATAAACAGAGTGAATACCCTACTGAATAAGCTGTTGAGAC
AGTTTCTCAATTATTCAGGAAAAAAA-TCCTACGGACCTTACGGATGCTG
AACAGTGAACAATGTATCTAGTGTCACATCTGAGCATAAGAGTGTTCAAG
ACTTGAACATTGTGTTTGGTTATTAAAAAAA-TCACATGTCAGCATCAGC
TAAGGAACAAGACTTGTCTTAAATATTTGTCTTATCTACTGAGGAAAACT
TTGGAGGCTAGGATTATGTTATTGGCATTGCAAATATCCAGAACAGCTAC
ATCAACTAAATATATAACATTTCGTCAATTAAAGATAGCATCCTGCTGAC
TCAACACGTTTGACATATTTTTCACATGTTTAAAACAATTTCAGGCACAA
ATGACCAAACAGTGCAGTCGTGCAGTTCTACTGATATAGCATACAGTGGG
ATTTGGACACACATTCATAATTCATTGCTGCCCCTATCATATCAAGAAAT
ATCAGAATGCCCATGTGTTATTTAGAAAAGTTAGTAATTTGATAGTGATC
TCAAGATGTTTGAAAGCTGGCACCAATGCAAGCATCATTTTGTAGGTGCA
TTGGAAATCAACTTGTCAAAAATTAGTTCAACCAATACAGAAGA
View all "LDregion5A" genotypes
KFS1   NULL South Africa   LDregion5B AGATGCATTCAGGTATGCATGCAGTGTGTTGGCAGTTTGAATAGTGGCTC
AGATCCTTTAATCGTCTCATACTTTC-AAAGATCATA-TTTCTGTTTACA
CTTTATGCTGAGGACTATGTATGTCAACAACATAATAAAAATGCCTTAAA
GACAGTACTGGTTACAGCACATAAAAA-AATACAGAATTGATAGGATTT-
TTTTAGCATTGAGACATCTGCAAGAACTTAAGGGAATCAAATTCTAAATA
AAAGAACCATATGTGCTGAACGTGTTCAGTTAAACGGTTCTCCCTCCATC
CCAAATTATAGGTCGTTTTGGTTTTTCTAGATAC------ATAATAAGAA
AAATGTATATCTAAGAAAAGCCAAAACGGACTATAATTTGGAATGGAGGG
AGCATATGCTAAACATTCAGTCACTCATTCTTAGCCAAAAAGTAGGCTAC
AGGTCCTAAACGTCCATTTAATCAGCCCAAAAAGACCTTTTAGCGTTTAT
ATGATGTTTAATCAGCCTAAACACAATTGAACATAAATAAATATCTTCAA
GGTGTACTTTTCAGAAATTTCCAAACTGTAGATTATGATTTAAGACTAGA
TGCCTTATGAGTTATGAAGCAAACCATACAGCAGACAAGTCAGTGAGAGA
CTGAGAATCCAACAAATATTTGGACCAAA
View all "LDregion5B" genotypes
KFS1   NULL South Africa   LDregion5C TAAGAGGAATGATTCAAATTCCGCAATTATAACGCGCCCATCGGCTTCAT
GCTTAGAAGCTGAAAAGTGCAAGGAAGTGGAATCTAAGAAAGAACTGTAC
TACATGTGAAATTTAGTTATGAAAAACTAACAACCATTCCATATGCCTAT
TTGTTAAGGAGCTTGCTGGCCTGGAACTTTTCATTCCTTAATTTTAGTTT
TTATACAGAAAAACGTGCATAGATATATCAAGAGAAGATGAACAGGTACA
CAGATGCATGCCTTAAGTTT-------------ATTCTTGCAATGATTAT
CCTAATTCTAACACAATCTATAAAAGTGACCATATTCTTTTAGGACTTTA
TAACTGGCATAATACACCCACATGCTCCTCTAGTCATGACATGAAAACAT
GAGTACTGGCTGTCATGATCTGTAAGATGCTTTGCTCTGTTCTGATTTTC
AACTCAAAAAATTCTAAATTAAAAAATTCAATAGTCTGGACAACTTTGTC
ATAGAATATGACTACCAAATTAGAAGCAGTTACTAAACCAGGTCTTGAAA
TACAATCATAAAACTATAATTCGAAAAACAGAATGGCTGCGGCATTAGAA
TAGAAAATAGAAAATTGTGTATGGAGCTAGGATAGCATGGAATCATCTCC
AAACATACATGTTCTATCCAAGTTGAAAGACACC
View all "LDregion5C" genotypes
KFS1   NULL South Africa   LDregion5D CTCTTCTCGGCCTCCCCCACCTGCTCGACCAAATGCCCAGCCGGGGATTC
CAAAATGTCTAC----GTGTGGTTACGGCGAAGGTTTCGGATCGTCTCGT
AGTTTTCCTTTGTGTTAAGTCTGATGCTGCTGCGAACATGTGAAGGACTA
ACTGTTTAATTTGCTTGCTTGCCTACGTTCTGTGAAGTAAAGTCCACAAA
TGACAATGCTGAATGTCTGCCACTGAAACTGTGTTGCCACTTACAAAGCC
TTCATCTCTTGCTTATCCATTGCATAAGATTTTTAGTCCAATAGTTGTAC
AGATGGTAGAGTGATGCGTATGGCAGTCATGTTTACCAGAAAAGATGAAT
CTGTTGTTTGTGTTAACCATAGTTGAAATGTGTTGGAAAATATGGAGTAG
ACTATTTCGTTGCCTAACAAACTTTAGTTCAAAATGTGCTCGCTGTGA-T
TGCTTTCAACTTTTCTTTTTCCTTAGAGAGAAATAGTTATGACCTTCTAT
GCAGTTTGATGCACTTGTTGCGGCATTGCCACTATCATCAGAAGAGGATC
AAGTGAAAAGAATCCAAGAGCTACAGGTAGATATCTGACAGTCAGATTAA
TTTATCGAGCACTGATTTTTCAAGGATGGGCATCTGTCAAGCTCCTCCAT
TAAATTGTATATAAAATTAAAATTTG
View all "LDregion5D" genotypes
KFS1   NULL South Africa   LDregion6B CATCATCACAGGTAAGCAGTACGCTGAAAGCAGGCCCCCAAACCAGAAGG
AAAGCGAACAGAAACTTGCACAGGTCGCACGGGCCTTAGTTGGAAATATC
TCTGAGCAGAGAATGTTGGGTATTGGTCCCAAACCAATGACATAGGAGCA
GAAGCAAACTGTTAATGCGAAGTGGAAGACGATGGCACGGTCGAACGGTC
CCATATTGAACAGGATGGACATAGACATAACGCTCAATGATAATATAAGG
ATAGGAGTAGTGGCCAGCACAAGAACCCTACAAAAAAAAGGTTGAGTTGT
ATTAAAAAGTAGTTTCTATCAGGAAGACAGGAACAGGAACAAACATGTAA
AAAGAATTAACTAAAATGAATATTTACTTAGAAATCATGATCACTACATG
ACAAACTTGTTGCTGGATAAGCCGGCAAAGCGAAATGTTGGTAGATAATG
TTGGCAAGGGA-TTTTTTTAGGATACCCAATGCAAATAAACCTAAGAAGC
AGAGTGTGGAATCACAACTATACAATGTCAGAGTATTGGAGTTCAGAAAT
GGTACAACATCTAATGCTGCTGGTGAGGCAGCAAAAGGCTATATAATGAG
ACCAGATGGTGTATCTATGAACAGACCTCTTTCTCTTGGTCATGAGGATG
CATTTCTACTAATTGTAAATCAACATTATTGTGAAACTGTAATGTTGATG
GTGTCTCAAAGTTTACCTTCTTCCGCAGACATCCATCAGCAGCATTGCGG
CAGTTATACAAGGGAG
View all "LDregion6B" genotypes
KFS1   NULL South Africa   LDregion6C CACCC-------AATCGCCTGAAAAATTGTGGCTGCCGTTTCAGATTGCT
CTCTGCATCTGATTTTTGGCTTTGCTTTACCTGCATGTCTCAAGTCTAGT
TACCATGGGAATACACATGTGTAACATGCTTTGCATATTTTCATTTTCAT
GGTCTTAGGCTCTTGTTTTGATGAATTCAATGCCTGCATTAATTCTTTCA
ATACTTTCTGCTAAGTTTGAGTTATCTTGTGCTTAATTGTATATCAGCTG
TATTAAAAGCACTGTGATACATAAAAAATTT--TTTAGTCACTTGAAAAT
ATTAAGAGAAATTTAGTTATCGGGGAGAAGGGGAGGGGATTGGGTTGGGT
TTTGATTCTCCCTTTTTAATTGTAGATATTATGCTAAGACTTTTTTAGGA
ACAAAAGTTCAATTTCAGCTGGCTGACTACAATCAGCGGTGTGCTAATCT
TCTTTTACTGGAATGAAAGCACACATGCAGTTCAGCCTAACCTATTT-AT
CTAGGTGGGCATAAGAGTTTCATTGCTATTCATGTTAGTTTTTAAAAGTT
TGATGAGTGCAATATGGTGAATTGAGATAGCATCGGGGAGCTGAGCCATG
TATGTTACTGTGGTTTGACTTGTGGTGTGCTGTAGACTAATTTATT-GAC
ATGTGCTTCCATACCCATCTCTAAATTATTATGCTGTACTATCAGTTCAA
ACACATATGAGAATTAAACGTTTGTGGTTAAAACTGATCCATCCATTCTG
TAGTTGTTGTCTACCGCCTTTTAGAATTTAGAGTGACACCTTTCGACTAG
CATATATATCAGGGAGTTGGGAGAATGCCATAGTTAGAACTTAGAAGCTA
TTAGATGCAACGGACATTTTGAATGTGAGACATTTATTTTATTGGCTAAA
---TGAATGAATGAAAATAATTATGATTTTAAGTATGGTTGTTCTAGTGC
TGCCAAGGATTAGGATACCTTAATTTGGGATACTAGGTTTGCTTATCCTC
TATAAATTACATTGTTTATTAGCAATGTGGCCTTAACACTTTCCATTCTG
ATGTTGCAGTCATCCTTTGGTTTCATTGACTACTATGACCGCAGATATGC
TGCACTAGCAATTTTATCTCTCAATGGCAGACCACTGTAAGCTTTTTGGT
TTTGTATTCCCTCCATTTGTAATTGTAAGTCGTTTTGGCTTTTCTAGATT
CATAGGTGTATAGCAAAACTATGTACCTAGAAAAGCCAAAATAACTTGCA
ATTGGAATGGAAGGAGTATGTGCTAATTTCTATGATCACTGCCCTGTTTT
TTGGCACTAATTTTCTAATTATCACCAAAAATCCAGGTATGGTCAGCCAA
TAAAAG
View all "LDregion6C" genotypes
[ Download ]