grain_icon Diversity Home | Tools | SNP Query | Launch TASSEL | Download Data Sets | Tutorials | FAQ | Release Notes

View Marker "RM5752"

There is allele data for locus "RM5752" from 2 experiments.


Title Design Polymorphism Type Allele Scoring Protocol PI(s) Comments Data
Genetic structure and diversity in Oryza sativa L. 234 rice accessions from wide geographical regions of the world genotyped at 169 nuclear and 2 chloroplast loci to elucidate diversity within subspecies Oryza sativa indica and japonica SSR PCR products were size separated by capillary elctrophoresis using ABI 3700 DNA analyzer; SSRs were analysed with GenScan 3.1.2 software and scored with Genotyper 2.5 software. McCouch-S-R, Tai-T-H Prediction of population structure was model-based (STRUCTURE) and based on data from 169 genomic SSRs. Reference: Garris et al., 2005. Show Allele Data
Population Structure and Breeding Patterns of 145 U.S. Rice Cultivars Based on SSR Marker Analysis 115 U.S rice cultivars and 30 ancestral rice accessions introduced from Asia were genotyped by means of 169 genomic SSR markers. SSR PCR products were size separated using ABI 3700 DNA analyzer; SSR fragements sizes were estimated with GenScan 3.1.2 software. Alleles were scored with Genotyper 2.5 software using the LocalSouthernMethod, and binned manually. McCouch-S-R, Tai-T-H Population structure was inferred using genetic-distance method with 169 SSR markers. Reference: Lu et al., 2005. Show Allele Data