grain_icon Diversity Home | Tools | SNP Query | Launch TASSEL | Download Data Sets | Tutorials | FAQ | Release Notes

View Marker "RM243"

There is allele data for locus "RM243" from 3 experiments.

Title Design Polymorphism Type Allele Scoring Protocol PI(s) Comments Data
Evaluation of Genetic diversity in Rice Subspecies Using Microsatellite Markers 38 U.S rice cultivars and 2 wild relatives were genotyped by means of 111 genomic SSR markers SSR PCR products were size separated using ABI 377 DNA analyzer; SSR fragements sizes were estimated with GenScan software. Alleles were called manually using PCR products of IR36 as a standard. Mackill-D-J Population structure was inferred using genetic-distance method with 111 SSR markers. Reference: Ni et al., 2002. Show Allele Data
Mapping quantitative trait loci for yield, yield components and morphological traits in an advanced backcross population between Oryza rufipogon and the Oryza sativa cultivar Jefferson Phenotypic evaluation was done in a greenhouse for 353 BC2F1 families and in three field trials for 258 BC2F2 families. Genotyping (104 SSRs and 49 RFLPs) was done on the 353 BC2F2 families SSR RFLP Geneotype value 1= Homozygous Jefferson; 3 = Heterozygous Jefferson/O. rufipogon., McCouch-S-R Seventy-six QTLs were identified using interval mapping and composite interval mapping. A putative QTL was reported if detected in at least one environment at an experiment-wise significance threshold of P < 0.01. Reference: Thomson et al., 2003. Show Allele Data
Quantitative trait loci for yield and yield components in an Oryza sativa X Oryza rufipogon BC2F2 population evaluated in an upland environment 274 BC2F2 families from the Caiapo X Oryza rufipogon (IRGC 105491) were phenotyped for 8 traits and genotyped with 125 RFLPs and SSLPs. SSR RFLP Geneotype value 1= Homozygous Caiapo; 3 = Heterozygous Caiapo/O. rufipogon., McCouch-S-R Reference: Moncada et al., 2001. Show Allele Data